Table 1

HIV-1 protein sequences used in this study

Sequences*
GENE
 Total
 A-A1
 B
 C
 D
 F1
 F2
 G
 H
 K
 O
 01
 02
 04
 06
 10
 11
 12
 CPZ
GAG
 207
 10
 37
 28
 5
 7
 2
 4
 3
 3
 5
 14
 8
 3
 4
 3
 4
 3
 5
POL
 204
 11
 34
 26
 5
 4
 3
 4
 3
 2
 5
 14
 12
 3
 4
 3
 5
 3
 5
ENV
 408
 24
 128
 51
 17
 5
 5
 9
 3
 2
 10
 33
 16
 3
 5
 3
 6
 3
 5
VIF
 427
 28
 190
 40
 13
 5
 5
 5
 3
 2
 24
 15
 12
 3
 4
 3
 4
 12
 5
TAT
 219
 11
 39
 29
 7
 6
 3
 4
 3
 2
 4
 14
 14
 3
 6
 3
 4
 3
 5
REV
 231
 13
 39
 38
 10
 6
 3
 4
 3
 2
 4
 17
 12
 3
 4
 3
 4
 3
 5
VPU/VPX
 333
 14
 87
 50
 18
 6
 3
 6
 3
 2
 15
 25
 14
 3
 4
 3
 4
 3
 5
VPR
 368
 9
 142
 44
 7
 4
 3
 5
 3
 2
 25
 16
 12
 3
 4
 3
 4
 3
 5
NEF
 449
 12
 282
 44
 4
 4
 3
 7
 5
 2
 4
 31
 12
 3
 4
 3
 11
 3
 4

*HIV-1 sequences were obtained from the HIV database for the indicated clade categories.

Reche et al. Medical Immunology 2006 5:1   doi:10.1186/1476-9433-5-1